Publications

Several scientific publications featuring yFiles or showcasing successful projects leveraging yFiles have been published. Presented below is a curated compilation of some of these applications.

About yFiles

• R. Wiese, M. Eiglsperger, M. Kaufmann: yFiles: Visualization and Automatic Layout of Graphs, Proceedings of the 9th International Symposium on Graph Drawing (GD 2001), pp. 453 ff., © Springer-Verlag, 2001.

yFiles and Graph Drawing

• B. Diebold, M. Kaufmann: Usage-based Visualization of Web Localities, Proc. Information Visualisation 2001, (InVis.au), Australian Computer Society, pp. 159-164.
• M. Kaufmann, T. Kraetschmer: Electronic Brainstorming With Graphical Structures of Ideas, ECIS 2002
• M. Kaufmann, R. Wiese: Maintaining the Mental Map for Circular Drawings, Proceedings of the 10th International Symposium on Graph Drawing (GD 2002), pp. 12-22, LNCS 2528, 2002.
• U. Brandes, M. Eiglsperger, M. Kaufmann, D. Wagner: Sketch-Driven Orthogonal Graph Drawing, Proceedings of the 10th International Symposium on Graph Drawing (GD 2002), pp. 1-11, LNCS series. © Springer-Verlag, 2002.

yFiles in Bioinformatics

• M. Y. Becker, I. Rojas: A Graph Layout Algorithm for Drawing Metabolic Pathways, Bioinformatics 17(5): 461-467 (2001)
• M. Sirava, T. Schäfer, M. Eiglsperger, M. Kaufmann, O. Kohlbacher, E. Bornberg-Bauer, H.-P. Lenhof: BioMiner - Modeling, Analysing and Visualizing Biochemical Pathways and Networks, Bioinformatics, 19(10), S219.
• M. Eiglsperger, M. Kaufmann: Visualization of Biodegradation Pathways in the UM-BBD, Currents in Computational Molecular Biology 2001, Les Publications CRM, Montreal, 2001, pp. 223-224

Computational Biology

• Obadia T, Silhol R, Opatowski L, Temime L, Legrand J, et al. (2015), Detailed Contact Data and the Dissemination of Staphylococcus aureus in Hospitals. PLoS Comput Biol 11(3): e1004170. doi: 10.1371/journal.pcbi.1004170